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2016

Conference
Pixel-level encoding and depth layering for instance-level semantic labeling   Paperuhrig_gcpr16.pdf
Jonas Uhrig, M. Cordts, U. Franke, Thomas Brox
German Conference on Pattern Recognition (GCPR), 2016
FSI schemes: Fast semi-iterative solvers for PDEs and Optimisation Methods   Paperhafner-gcpr16.pdf doi>
D. Hafner, Peter Ochs, J. Weickert, M. Reißel, S. Grewenig
German Conference on Pattern Recognition (GCPR), Springer, LNCS, Vol.9796: 91--102, 2016
Robust interactive multi-label segmentation with an advanced edge detector   Papermueller-gcpr2016.pdf doi>
S. Müller, Peter Ochs, J. Weickert, N. Graf
German Conference on Pattern Recognition (GCPR), Springer, LNCS, Vol.9796: 117--128, 2016
Multi-view 3D Models from Single Images with a Convolutional Network   Paperpaper-mv3d.pdf Code/data
Maxim Tatarchenko, Alexey Dosovitskiy, Thomas Brox
European Conference on Computer Vision (ECCV), 2016
Point-wise mutual information-based video segmentation with high temporal consistency   doi>
Margret Keuper, Thomas Brox
ECCV 2016 workshops, Springer, 2016
Generating Images with Perceptual Similarity Metrics based on Deep Networks   Code/data
Alexey Dosovitskiy, Thomas Brox
Advances in Neural Information Processing Systems (NIPS), 2016
Synthesizing the preferred inputs for neurons in neural networks via deep generator networks  
A. Nguyen, Alexey Dosovitskiy, J. Yosinski, Thomas Brox, J. Clune
Advances in Neural Information Processing Systems (NIPS), 2016
Protein contact prediction from amino acid co-evolution using convolutional networks for graph-valued images   Paperp5.pdf
V. Golkov, M. Skwark, A. Golkov, Alexey Dosovitskiy, Thomas Brox, J. Meiler, D. Cremers
Advances in Neural Information Processing Systems (NIPS), 2016

Others
From voxels to models: towards quantification in 3-D confocal microscopy   PaperDissertation_ThorstenFalk_2016.pdf doi>
Thorsten Falk
PhD thesis from Albert-Ludwigs-Universität Freiburg, 2016
RGBD Semantic Segmentation Using Spatio-Temporal Data-Driven Pooling   doi>
Y. He, W. Chiu, Margret Keuper, M. Fritz
Technical Report , arXiv:1604.02388, 2016
A Multi-cut Formulation for Joint Segmentation and Tracking of Multiple Objects   doi>
Margret Keuper, S. Tang, Y. Zhongjie, B. Andres, Thomas Brox, B. Schiele
Technical Report , arXiv:1607.06317, 2016
Object Detection, Tracking, and Motion Segmentation for Object-level Video Segmentation   Paper1608.03066v1.pdf
Benjamin Drayer, Thomas Brox
Technical Report , arxiv:1608.03066, 2016
Unifying abstract inexact convergence theorems for descent methods and block coordinate variable metric iPiano   Paperochs_abstr_conv_arXiv2016.pdf
Peter Ochs
Technical Report , arXiv:1602.07283 [math.OC], 2016
Segmentation in Point Clouds from RGB-D Using Spectral Graph Reduction   doi>
Margret Keuper, Thomas Brox
Springer: 155--168, 2016
 
2015
Journal
On iteratively reweighted algorithms for non-smooth non-convex optimization in computer vision   PaperIRconvex.pdf doi>
Peter Ochs, Alexey Dosovitskiy, Thomas Brox, T. Pock
SIAM Journal on Imaging Sciences, 8(1): 331-372, 2015
B cell antigen receptors of class IgM and IgD are clustered in different protein islands that are altered during B cell activation   doi>
P. Maity, A. Blount, H. Jumaa, Olaf Ronneberger, B. Lillemeier, M. Reth
Science Signalling, 8(394): ra93, 2015
An evaluation of volume-based morphometry for prediction of mild cognitive impairment and Alzheimers disease   doi>
D. Schmitter, A. Roche, B. Marechal, D. Ribes, Ahmed Abdulkadir, M. Bach-Cuadra, A. Daducci, C. Granziera, S. Kloeppel, P. Maeder, R. Meuli, G. Krueger
NeuroImage Clinical, 7: 7--17, 2015
Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: The CADDementia challenge   doi>
E. Bron, M. Smits, W. van der Flier, H. Vrenken, F. Barkhof, P. Scheltens, J. Papma, R. Steketee, C. M\'{e}ndez Orellana, R. Meijboom, M. Pinto, J. Meireles, C. Garrett, A. Bastos-Leite, Ahmed Abdulkadir, Olaf Ronneberger, N. Amoroso, R. Bellotti, D. C\'{a}rdenas-Pe\~{n}a, A. \'{A}lvarez-Meza, C. Dolph, K. Iftekharuddin, S. Eskildsen, P. Coup\'{e}, V. Fonov, K. Franke, C. Gaser, C. Ledig, R. Guerrero, T. Tong, K. Gray, E. Moradi, J. Tohka, A. Routier, S. Durrleman, A. Sarica, G. Di Fatta, F. Sensi, A. A
NeuroImage, 111: 562–-579, May 2015
Spontaneous and electric field-controlled front-rear polarization of human keratinocytes   doi>
D. Saltukoglu, J. Grünewald, N. Strohmeyer, Robert Bensch, M. Ulbrich, Olaf Ronneberger, M. Simons
Molecular Biology of the Cell, 26(24): 4373--4386, Dec 2015
iPiasco: Inertial Proximal Algorithm for strongly convex Optimization   Paperipiasco.pdf doi>
Peter Ochs, Thomas Brox, T. Pock
Journal of Mathematical Imaging and Vision, 53(2): 171-181, Oct 2015
The polarity protein Inturned links NPHP4 to Daam1 to control the subapical actin network in multiciliated cells   doi>
T. Yasunaga, S. Hoff, C. Schell, M. Helmstädter, O. Kretz, S. Kuechlin, T. Yakulov, C. Engel, B. Müller, Robert Bensch, Olaf Ronneberger, T. Huber, S. Lienkamp, G. Walz
Journal of Cell Biology, 211(5): 963--973, 2015
Applying Automated MR-Based Diagnostic Methods to the Memory Clinic - A Prospective Study   doi>
S. Kloeppel, J. Peter, A. Ludl, A. Pilatus, S. Maier, I. Mader, B. Heimbach, L. Frings, K. Egger, J. Dukart, M. Schroeter, R. Perneczky, P. Haussermann, W. Vach, H. Urbach, S. Teipel, M. Huell, Ahmed Abdulkadir
Journal of Alzheimers Disease, 47(4): 939-954, Aug 2015
Modelling Two-Phase Flow in a Micro-Model with Local Thermal Non-Equilibrium on the Darcy Scale   doi>
P. Nuske, Olaf Ronneberger, N. Karadimitriou, R. Helmig, S. Hassanizadeh
International Journal of Heat and Mass Transfer, 88: 822--835, 2015
Large-scale brain network abnormalities in Huntington disease revealed by structural covariance   doi>
L. Minkova, S. Eickhoff, Ahmed Abdulkadir, C. Kaller, J. Peter, E. Scheller, J. Lahr, R. Roos, A. Durr, B. Leavitt, S. Tabrizi, S. Klöppel
Human Brain Mapping, Epub ahead of print, Oct 2015
Detection of Motor Changes in Huntington Disease Using Dynamic Causal Modeling   doi>
L. Minkova, E. Scheller, J. Peter, Ahmed Abdulkadir, C. Kaller, R. Roos, A. Durr, B. Leavit, S. Tabrizi, S. Kloeppel
Frontiers in Human Neuroscience, 9(634): 1--13, Nov 2015
The Rac1 regulator ELMO controls basal body migration and docking in multiciliated cells through interaction with Ezrin   doi>
D. Epting, K. Slanchev, C. Boehlke, S. Hoff, N. Loges, T. Yasunaga, L. Indorf, S. Nestel, S. Lienkamp, H. Omran, W. Kuehn, Olaf Ronneberger, G. Walz, a. Kramer-Zucker
Development, 142(1): 174--184, Jan 2015

Conference
U-Net: Convolutional Networks for Biomedical Image Segmentation   doi> Code/data
Olaf Ronneberger, Philipp Fischer, Thomas Brox
Medical Image Computing and Computer-Assisted Intervention (MICCAI), Springer, LNCS, Vol.9351: 234--241, 2015
q-Space Deep Learning for Twelve-Fold Shorter and Model-Free Diffusion MRI Scans   PaperMICCAI2015.pdf
V. Golkov, Alexey Dosovitskiy, P. Sämann, J. Sperl, T. Sprenger, M. Czisch, M. Menzel, P. Gómez, A. Haase, Thomas Brox, D. Cremers
Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2015
Bilevel Optimization with Nonsmooth Lower Level Problems   Paperochs_ssvm2015_bilevel.pdf doi>
Peter Ochs, R. Ranftl, Thomas Brox, T. Pock
International Conference on Scale Space and Variational Methods in Computer Vision (SSVM), Springer, LNCS, Vol.9087: 654--665, 2015
Cell segmentation and tracking in phase contrast images using graph cut with asymmetric boundary costs   Paperpaper-Bensch2015.pdf doi> Code/data
Robert Bensch, Olaf Ronneberger
IEEE International Symposium on Biomedical Imaging (ISBI): 1220--1223, 2015

Display the complete list (354 publications)
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