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2014

Conference
Voxel-based multi-class classification of AD, MCI, and elderly controls   Code/data
Ahmed Abdulkadir, J. Peter, Olaf Ronneberger, Thomas Brox, S. Kloeppel
Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2014 - CADDementia Challenge, 2014
Reduction of Confounding Effects with Voxel-wise Gaussian Process Regression in Structural MRI   doi>
Ahmed Abdulkadir, Olaf Ronneberger, S. Tabrizi, S. Kloeppel
International Workshop on Pattern Recognition in Neuroimaging (PRNI) 2014: 1-4, 2014
Optical Flow Guided Cell Segmentation and Tracking in Developing Tissue   doi>
Kun Liu, S. Lienkamp, A. Shindo, J. Wallingford, G. Walz, Olaf Ronneberger
IEEE International Symposium on Biomedical Imaging (ISBI): 298--301, 2014
Reconstruction of Rigid Body Models from Motion Distorted Laser Range Data Using Optical Flow   Paperilg14icra.pdf
Eddy Ilg, R. Kümmerle, W. Burgard, Thomas Brox
IEEE International Conference on Robotics and Automation (ICRA), 2014
Spectral graph reduction for efficient image and streaming video segmentation   PaperEquivalence.pdf
F. Galasso, Margret Keuper, Thomas Brox, B. Schiele
IEEE International Conference on Computer Vision and Pattern Recognition (CVPR), 2014
Dense Elastic 3D Shape Matching   PaperSWSC14.pdf
Frank R. Schmidt, T. Windheuser, U. Schlickewei, D. Cremers
Global Optimization Methods, Springer, LNCS, Vol.8293: 1--18, 2014
Image Descriptors based on Curvature Histograms   Papergcpr2014_curvature.pdf
Philipp Fischer, Thomas Brox
German Conference on Pattern Recognition (GCPR), Springer, LNCS, 2014
Accurate Detection in Volumetric Images using Elastic Registration based Validation   Papermain96.pdf doi>
Dominic Mai, J. Dürr, K. Palme, Olaf Ronneberger
German Conference on Pattern Recognition (GCPR): 453--463, 2014
Training Deformable Object Models for Human Detection based on Alignment and Clustering  
Benjamin Drayer, Thomas Brox
European Conference on Computer Vision (ECCV), 2014
Dense semi-rigid scene flow estimation from RGBD images   Paperquiroga_sceneflow_eccv14.pdf Code/data
J. Quiroga, Thomas Brox, F. Devernay, J. Crowley
European Conference on Computer Vision (ECCV), 2014
First International Workshop on Video Segmentation - Panel Discussion   Paperpanel_iwvs14.pdf
Thomas Brox, F. Galasso, F. Li, J. Rehg, B. Schiele
European Conference on Computer Vision (ECCV), Springer, 2014
Improving Detection of Deformable Objects in Volumetric Data   doi>
Dominic Mai, J. Dürr, K. Palme, Olaf Ronneberger
British Machine Vision Conference (BMVC), 2014
Motion based foreground detection and poselet motion features for action recognition   Paperkraft_accv14.pdf
E. Kraft, Thomas Brox
Asian Conference on Computer Vision (ACCV), 2014
Discriminative Unsupervised Feature Learning with Convolutional Neural Networks   Code/data
Alexey Dosovitskiy, J. Springenberg, M. Riedmiller, Thomas Brox
Advances in Neural Information Processing Systems 27 (NIPS), 2014

Others
Descriptor Matching with Convolutional Neural Networks: a Comparison to SIFT   Paper1405.5769v1.pdf
Philipp Fischer, Alexey Dosovitskiy, Thomas Brox
Technical Report 1405.5769, arXiv(1405.5769), May 2014
Fourier based rotation invariance and biological image analysis : rotation invariant description and detection, and cell segmentation   doi>
Kun Liu
PhD thesis from Albert-Ludwigs-Universität Freiburg, 2014
 
2013
Journal
Automated processing of zebrafish imaging data - a survey   doi>
R. Mikut, T. Dickmeis, W. Driever, P. Geurts, F. Hamprecht, B. Kausler, M. Ledesma-Carbayo, R. Marée, K. Mikula, P. Pantazis, Olaf Ronneberger, A. Santos, R. Stotzka, U. Strähle, N. Peyriéras
Zebrafish, 10(3): 401--421, Aug 2013
Detection of preclinical neural dysfunction from functional connectivity graphs derived from task fMRI. An example from degeneration.   doi>
Y. Vives-Gilabert, Ahmed Abdulkadir, C. Kaller, W. Mader, R. Wolf, B. Schelter, S. Klöppel
Psychiatry Research, 214(3): 322–-330, Dec 2013
Interregional compensatory mechanisms of motor functioning in progressing preclinical neurodegeneration   doi>
E. Scheller, Ahmed Abdulkadir, J. Peter, S. J Tabrizi, R. J Frackowiak, S. Klöppel
NeuroImage, 75: 146–-154, 2013
Semi-automatic determination of cell surface areas used in systems biology   doi>
V. Morath, Margret Keuper, M. Rodriguez-Franco, S. Deswal, G. Fiala, B. Blumenthal, D. Kaschek, J. Timmer, G. Neuhaus, S. Ehl, Olaf Ronneberger, W. Schamel
Frontiers in Bioscience, Elite, 5: 533-545, 2013
Functional and Structural MRI Biomarkers to Detect pre-clinical Neurodegeneration   doi>
Ahmed Abdulkadir, Olaf Ronneberger, R. Wolf, B. Pfleiderer, C. Saftf, S. Klöppel
Current Alzheimer Research, 10(2): 125--134, 2013
Variational attenuation correction in two-view confocal microscopy   PaperSchmidt2013VariationalAttenuationCorrectionInTwo-ViewConfocalMicroscopy.pdf doi>
Thorsten Schmidt, J. Dürr, Margret Keuper, T. Blein, K. Palme, Olaf Ronneberger
BMC Bioinformatics, 14(1): 366, Dec 2013
Non-directional radial intercalation dominates deep cell behavior during zebrafish epiboly   doi>
Robert Bensch, S. Song, Olaf Ronneberger, W. Driever
Biology Open, 2(8): 845--854, 2013
Grey matter atrophy pattern in elderly with subjective memory impairment  
J. Peter, L. Scheef, Ahmed Abdulkadir, H. Boecker, M. Henekah, M. Wagnergh, A. Kopparag, S. Klöppel, F. Jessen
Alzheimers and Dementia, in press, 2013

Conference
Distances based on Non-rigid Alignment for Comparison of Different Object Instances  
Benjamin Drayer, Thomas Brox
Pattern Recognition (GCPR 2013), Springer, LNCS, Vol.8142: 215-224, 2013
Discriminative Detection and Alignment in Volumetric Data   Papergcpr2013_dmai.pdf doi>
Dominic Mai, Philipp Fischer, T. Blein, J. Dürr, K. Palme, Thomas Brox, Olaf Ronneberger
Pattern Recognition (GCPR 2013), Springer, LNCS, Vol.8142: 205-214, 2013
Joint 3D Cell Segmentation and Classification in the Arabidopsis Root using Energy Minimization and Shape Priors   doi>
Kun Liu, Thorsten Schmidt, T. Blein, J. Dürr, K. Palme, Olaf Ronneberger
IEEE International Symposium on Biomedical Imaging (ISBI): 422--425, 2013
Fast Trust Region for Segmentation   PaperGSB-cvpr13.pdf
L. Gorelick, Frank R. Schmidt, Y. Boykov
IEEE International Conference on Computer Vision and Pattern Recognition (CVPR), Jun 2013
A Unified Video Segmentation Benchmark: Annotation, Metrics and Analysis   Papervsb100_iccv13_new.pdf Code/data
F. Galasso, Naveen Shankar Nagaraja, T. Cardenas, Thomas Brox, B. Schiele
IEEE International Conference on Computer Vision (ICCV), Dec 2013
Point-Based 3D Reconstruction of Thin Objects   Paperummenhofer2013Point.pdf
Benjamin Ummenhofer, Thomas Brox
IEEE International Conference on Computer Vision (ICCV), 2013

Display the complete list (364 publications)
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