Publications

Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: The CADDementia challenge doi>

E. Bron, M. Smits, W. van der Flier, H. Vrenken, F. Barkhof, P. Scheltens, J. Papma, R. Steketee, C. M\'{e}ndez Orellana, R. Meijboom, M. Pinto, J. Meireles, C. Garrett, A. Bastos-Leite, Ahmed Abdulkadir, Olaf Ronneberger, N. Amoroso, R. Bellotti, D. C\'{a}rdenas-Pe\~{n}a, A. \'{A}lvarez-Meza, C. Dolph, K. Iftekharuddin, S. Eskildsen, P. Coup\'{e}, V. Fonov, K. Franke, C. Gaser, C. Ledig, R. Guerrero, T. Tong, K. Gray, E. Moradi, J. Tohka, A. Routier, S. Durrleman, A. Sarica, G. Di Fatta, F. Sensi, A. A

NeuroImage, 111: 562–-579, May 2015

Spontaneous and electric field-controlled front-rear polarization of human keratinocytes doi>

D. Saltukoglu, J. Grünewald, N. Strohmeyer, Robert Bensch, M. Ulbrich, Olaf Ronneberger, M. Simons

Molecular Biology of the Cell, 26(24): 4373--4386, Dec 2015

iPiasco: Inertial Proximal Algorithm for strongly convex Optimization Paper

doi>

Peter Ochs, Thomas Brox, T. Pock

Journal of Mathematical Imaging and Vision, 53(2): 171-181, Oct 2015

The polarity protein Inturned links NPHP4 to Daam1 to control the subapical actin network in multiciliated cells doi>

T. Yasunaga, S. Hoff, C. Schell, M. Helmstädter, O. Kretz, S. Kuechlin, T. Yakulov, C. Engel, B. Müller, Robert Bensch, Olaf Ronneberger, T. Huber, S. Lienkamp, G. Walz

Journal of Cell Biology, 211(5): 963--973, 2015

Applying Automated MR-Based Diagnostic Methods to the Memory Clinic - A Prospective Study doi>

S. Kloeppel, J. Peter, A. Ludl, A. Pilatus, S. Maier, I. Mader, B. Heimbach, L. Frings, K. Egger, J. Dukart, M. Schroeter, R. Perneczky, P. Haussermann, W. Vach, H. Urbach, S. Teipel, M. Huell, Ahmed Abdulkadir

Journal of Alzheimers Disease, 47(4): 939-954, Aug 2015

Modelling Two-Phase Flow in a Micro-Model with Local Thermal Non-Equilibrium on the Darcy Scale doi>

P. Nuske, Olaf Ronneberger, N. Karadimitriou, R. Helmig, S. Hassanizadeh

International Journal of Heat and Mass Transfer, 88: 822--835, 2015

Large-scale brain network abnormalities in Huntington disease revealed by structural covariance doi>

L. Minkova, S. Eickhoff, Ahmed Abdulkadir, C. Kaller, J. Peter, E. Scheller, J. Lahr, R. Roos, A. Durr, B. Leavitt, S. Tabrizi, S. Klöppel

Human Brain Mapping, Epub ahead of print, Oct 2015

Detection of Motor Changes in Huntington Disease Using Dynamic Causal Modeling doi>

L. Minkova, E. Scheller, J. Peter, Ahmed Abdulkadir, C. Kaller, R. Roos, A. Durr, B. Leavit, S. Tabrizi, S. Kloeppel

Frontiers in Human Neuroscience, 9(634): 1--13, Nov 2015

The Rac1 regulator ELMO controls basal body migration and docking in multiciliated cells through interaction with Ezrin doi>

D. Epting, K. Slanchev, C. Boehlke, S. Hoff, N. Loges, T. Yasunaga, L. Indorf, S. Nestel, S. Lienkamp, H. Omran, W. Kuehn, Olaf Ronneberger, G. Walz, a. Kramer-Zucker

Development, 142(1): 174--184, Jan 2015

U-Net: Convolutional Networks for Biomedical Image Segmentation doi> Code/data

Olaf Ronneberger, Philipp Fischer, Thomas Brox

Medical Image Computing and Computer-Assisted Intervention (MICCAI), Springer, LNCS, Vol.9351: 234--241, 2015

q-Space Deep Learning for Twelve-Fold Shorter and Model-Free Diffusion MRI Scans Paper

V. Golkov, Alexey Dosovitskiy, P. Sämann, J. Sperl, T. Sprenger, M. Czisch, M. Menzel, P. Gómez, A. Haase, Thomas Brox, D. Cremers

Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2015

Bilevel Optimization with Nonsmooth Lower Level Problems Paper

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Peter Ochs, R. Ranftl, Thomas Brox, T. Pock

International Conference on Scale Space and Variational Methods in Computer Vision (SSVM), Springer, LNCS, Vol.9087: 654--665, 2015

Cell segmentation and tracking in phase contrast images using graph cut with asymmetric boundary costs Paper

doi> Code/data

Robert Bensch, Olaf Ronneberger

IEEE International Symposium on Biomedical Imaging (ISBI): 1220--1223, 2015

3D-Reconstruction of Indoor Environments from Human Activity Paper

B. Frank, M. Ruhnke, Maxim Tatarchenko, W. Burgard

IEEE International Conference on Robotics and Automation (ICRA), 2015

Learning to Generate Chairs with Convolutional Neural Networks Paper

Code/data

Alexey Dosovitskiy, J. Springenberg, Thomas Brox

IEEE International Conference on Computer Vision and Pattern Recognition (CVPR), 2015

Efficient Decomposition of Image and Mesh Graphs by Lifted Multicuts Paper

Margret Keuper, E. Levinkov, N. Bonneel, G. Lavoue, Thomas Brox, B. Andres

IEEE International Conference on Computer Vision (ICCV), 2015

Motion Trajectory Segmentation via Minimum Cost Multicuts Paper

Code/data

Margret Keuper, B. Andres, Thomas Brox

IEEE International Conference on Computer Vision (ICCV), 2015

Video Segmentation with Just a Few Strokes Code/data

Naveen Shankar Nagaraja, Frank R. Schmidt, Thomas Brox

IEEE International Conference on Computer Vision (ICCV), 2015

Unsupervised Generation of a Viewpoint Annotated Car Dataset from Videos Paper

Nima Sedaghat, Thomas Brox

IEEE International Conference on Computer Vision (ICCV), 2015

Global, Dense Multiscale Reconstruction for a Billion Points Paper

Code/data

Project

Benjamin Ummenhofer, Thomas Brox

IEEE International Conference on Computer Vision (ICCV), 2015

FlowNet: Learning Optical Flow with Convolutional Networks Paper

Code/data

Alexey Dosovitskiy, Philipp Fischer, Eddy Ilg, P. Häusser, C. Hazırbaş, V. Golkov, P. Smagt, D. Cremers, Thomas Brox

IEEE International Conference on Computer Vision (ICCV), 2015

Striving for Simplicity: The All Convolutional Net Paper

J. Springenberg, Alexey Dosovitskiy, Thomas Brox, M. Riedmiller

ICLR (workshop track), 2015

Image Orientation Estimation with Convolutional Networks Paper

Philipp Fischer, Alexey Dosovitskiy, Thomas Brox

German Conference on Pattern Recognition (GCPR), Springer, 2015

Spatiotemporal Deformable Prototypes for Motion Anomaly Detection Paper

doi> Code/data

Robert Bensch, Thomas Brox, Olaf Ronneberger

British Machine Vision Conference (BMVC), BMVA Press: 189.1--189.12, 2015

Combinatorial Regularization of Descriptor Matching for Optical Flow Estimation

Benjamin Drayer, Thomas Brox

British Machine Vision Conference (BMVC), 2015

Long Term Motion Analysis for Object Level Grouping and Nonsmooth Optimization Methods Paper

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Peter Ochs

PhD thesis from Albert-Ludwigs-Universität Freiburg, Mar 2015

The iRoCS Toolbox – 3D Analysis of the Plant Root Apical Meristem at Cellular Resolution doi> Code/data

Thorsten Schmidt, T. Pasternak, Kun Liu, T. Blein, D. Aubry-Hivet, A. Dovzhenko, J. Dürr, W. Teale, F. Ditengou, Hans Burkhardt, Olaf Ronneberger, K. Palme

The Plant Journal, 77(5): 806--814, Mar 2014