Publications

SHREC10 Track: Protein Model Classification doi>

L. Mavridis, V. Venkatraman, D. Ritchie, N. Morikawa, R. Andonov, A. Cornu, N. Malod-Dognin, J. Nicolas, Maja Temerinac-Ott, M. Reisert, Hans Burkhardt, A. Axenopoulos, P. Daras

Eurographics Workshop on 3D Object Retrieval, Eurographics Association: 117--124, 2010

Semi-Supervised Learning of Edge Filters for Volumetric Image Segmentation Paper

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Margret Keuper, Robert Bensch, K. Voigt, A. Dovzhenko, K. Palme, Hans Burkhardt, Olaf Ronneberger

32nd DAGM Symposium, Springer, LNCS: 462--471, 2010

Mean Shifting Gradient Vector Flow: An Improved External Force Field for Active Surfaces in Widefield Microscopy Paper

Margret Keuper

Technical Report 255, IFF-LMB, Universität Freiburg(255), 2010

Evaluation of a New Point Clouds Registration Method based on Group Averaging Features Paper

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Maja Temerinac-Ott

Technical Report 254, University of Freiburg(254), Jan 2010

Tile-based Lucy-Richardson Deconvolution Modelling a Spatially-Varying PSF for Fast Multiview Fusion of Microscopical Images Paper

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Maja Temerinac-Ott

Technical Report 260, University of Freiburg(260), 2010

XuvTools: free, fast and reliable stitching of large 3D datasets Paper

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M. Emmenlauer, Olaf Ronneberger, A. Ponti, P. Schwarb, A. Griffa, A. Filippi, R. Nitschke, W. Driever, Hans Burkhardt

Journal of Microscopy, 233(1): 42--60, 2009

On local region models and a statistical interpretation of the piecewise smooth Mumford-Shah functional Paper

Thomas Brox, D. Cremers

International Journal of Computer Vision, 84(2): 184-193, Jun. 2009

Continuous global optimization in multiview 3D reconstruction Paper

K. Kolev, M. Klodt, Thomas Brox, D. Cremers

International Journal of Computer Vision, 84(1): 80-96, May 2009

Rotational Invariance Based on Fourier Analysis in Polar and Spherical Coordinates Paper

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Qing Wang, Olaf Ronneberger, Hans Burkhardt

IEEE Transactions on Pattern Analysis and Machine Intelligence, 31(9): 1715--1722, 2009

Localised mixture models in region-based tracking Paper

C. Schmaltz, B. Rosenhahn, Thomas Brox, J. Weickert

Pattern Recognition (Proc. DAGM), Springer, LNCS, Sept. 2009

Using Lateral Coupled Snakes for Modeling the Contours of Worms Paper

Qing Wang, Olaf Ronneberger, E. Schulze, R. Baumeister, Hans Burkhardt

Pattern Recognition (Proc. DAGM), Springer, LNCS, Vol.10: 542--551, 2009

Increasing the Dimension of Creativity in Rotation Invariant Feature Design Using 3D Tensorial Harmonics Paper

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Henrik Skibbe, M. Reisert, Olaf Ronneberger, Hans Burkhardt

Pattern Recognition (Proc. DAGM), Springer, LNCS: 141-150, 2009

Fast Computation of 3D Spherical Fourier Harmonic Descriptors - A Complete Orthonormal Basis for a Rotational Invariant Representation of Three-Dimensional Objects Paper

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Henrik Skibbe, M. Reisert, Qing Wang, Olaf Ronneberger, Hans Burkhardt

IEEE International Workshop on 3-D Digital Imaging and Modeling (3DIM 2009), in conjunction with the ICCV 2009: 1863--1869 , 2009

Image Analysis of Arabidopsis Trichome Patterning in 4D Confocal Datasets Paper

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Robert Bensch, Olaf Ronneberger, B. Greese, C. Fleck, K. Wester, M. Hülskamp, Hans Burkhardt

IEEE International Symposium on Biomedical Imaging (ISBI): 742--745, 2009

Large displacement optical flow Paper

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Thomas Brox, C. Bregler, J. Malik

IEEE International Conference on Computer Vision and Pattern Recognition (CVPR), Jun. 2009

Multichannel image restoration based on optimization of the structural similarity index Paper

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Maja Temerinac-Ott, Hans Burkhardt

IEEE Asilomar Conference on Signals, Systems and Computers, IEEE: 812--816 , 2009

A 3D Active Surface Model for the accurate Segmentation of Drosophila Schneider Cell Nuclei and Nucleoli Paper

Margret Keuper, J. Padeken, P. Heun, Hans Burkhardt, Olaf Ronneberger

Advances in Visual Computing: 865-874, 2009

Efficient nonlocal means for denoising of textural patterns Paper

Code/data

Thomas Brox, O. Kleinschmidt, D. Cremers

IEEE Transactions on Image Processing, 17(7): 1083-1092, Jul. 2008

Spatial quantitative analysis of fluorescently labeled nuclear structures: problems, methods, pitfalls doi>

Olaf Ronneberger, D. Baddeley, F. Scheipl, P. Verveer, Hans Burkhardt, C. Cremer, L. Fahrmeir, T. Cremer, B. Joffe

Chromosome Research, 16(3): 523-562, May 2008

Invariance via Group-Integration: A Feature Framework for 3D Biomedical Image Analysis

J. Fehr, Olaf Ronneberger, J. Schulz, Thorsten Schmidt, M. Reisert, Hans Burkhardt

Proceedings of Computer Graphics and Imaging (CGIM): 276--285, 2008

Staying well grounded in markerless motion capture Paper

B. Rosenhahn, C. Schmaltz, Thomas Brox, J. Weickert, H. Seidel

Pattern Recognition (Proc. DAGM), Springer, LNCS, Vol.5096: 385-395, Jun. 2008

Modeling and tracking constrained mechanical systems Paper

B. Rosenhahn, Thomas Brox, D. Cremers, H. Seidel

International Workshop on Robot Vision, Springer, LNCS, Vol.4931: 98-110, Feb. 2008

Nonlocal texture filtering with efficient tree structures and invariant patch similarity measures Paper

Thomas Brox, O. Kleinschmidt, D. Cremers

International Workshop on Local and Nonlocal Approximation, Aug. 2008

Dealing with self-occlusion in region based motion capture by means of internal regions Paper

C. Schmaltz, B. Rosenhahn, Thomas Brox, J. Weickert, L. Wietzke, G. Sommer

International Conference on Articulated Motion and Deformable Objects, Springer, LNCS, Vol.5098: 102-111, Jul. 2008

Fast and robust segmentation of spherical particles in volumetric data sets from brightfield microscopy Paper

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Olaf Ronneberger, Qing Wang, Hans Burkhardt

IEEE International Symposium on Biomedical Imaging (ISBI): 372--375, 2008

Markerless motion capture of man-machine interaction Paper

B. Rosenhahn, C. Schmaltz, Thomas Brox, D. Cremers, J. Weickert, H. Seidel

IEEE International Conference on Computer Vision and Pattern Recognition (CVPR), Jun. 2008

Efficient dense 3D scene flow from sparse or dense stereo data Paper

A. Wedel, C. Rabe, T. Vaudrey, Thomas Brox, U. Franke, D. Cremers

European Conference on Computer Vision (ECCV), Springer, LNCS, Vol.5302: 739-751, Oct. 2008

3D-Invarianten zur automatischen Pollenerkennung Paper

Olaf Ronneberger

Ausgezeichnete Informatikdissertationen 2007, Gesellschaft für Informatik, 2008

Fourier Analysis in Polar and Spherical Coordinates Paper

Qing Wang, Olaf Ronneberger, Hans Burkhardt

Technical Report 1, IIF-LMB, Computer Science Department, University of Freiburg (1), 2008

Invariant Features for Searching in Protein Fold Databases Paper

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Maja Temerinac-Ott, M. Reisert, Hans Burkhardt

Journal on Computer Mathematics, 84(5): 635--651, 2007