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Homepage of Olaf Ronneberger


Photo of Olaf Ronneberger apl. Prof. Dr. Olaf Ronneberger

Google DeepMind
London, UK
Email: olafr@google.com
Tel.: +44 20 3321 1736

and

Albert-Ludwigs-Universität Freiburg
Institut für Informatik
Lehrstuhl für Mustererkennung und Bildverarbeitung
Georges-Köhler-Allee 52
D-79110 Freiburg

Tel: +49-(0)761-203-8285
Fax: +49-(0)761-203-8262


Email:

Scientific Interests

  • Deep convolutional networks
  • Biomedical image analysis for volumetric images (3D) and volumetric movies (4D)
  • Rotation-invariant detection and recognition
  • Image registration, segmentation, tracking, and model learning
  • Computer enhanced microscopy (e.g. attenuation correction, stitching, fusion, deconvolution)

Teaching

This term:

Former lectures:

Software

Publications

(PDF's of all articles are available on my fulltext page. To reach it, please replace the "index.html" in the URL of this page with "fulltext".)


2016
Journal
Robert Bensch, N. Scherf, J. Huisken, Thomas Brox, Olaf Ronneberger
International Journal of Computer Vision, Online First: 1--22, Jul 2016

Conference

Medical Image Computing and Computer-Assisted Intervention (MICCAI), Springer, LNCS, Vol.9901: 1--9, 2016
 
2015
Journal

E. Bron, M. Smits, W. van der Flier, H. Vrenken, F. Barkhof, P. Scheltens, J. Papma, R. Steketee, C. M\'{e}ndez Orellana, R. Meijboom, M. Pinto, J. Meireles, C. Garrett, A. Bastos-Leite, Ahmed Abdulkadir, Olaf Ronneberger, N. Amoroso, R. Bellotti, D. C\'{a}rdenas-Pe\~{n}a, A. \'{A}lvarez-Meza, C. Dolph, K. Iftekharuddin, S. Eskildsen, P. Coup\'{e}, V. Fonov, K. Franke, C. Gaser, C. Ledig, R. Guerrero, T. Tong, K. Gray, E. Moradi, J. Tohka, A. Routier, S. Durrleman, A. Sarica, G. Di Fatta, F. Sensi, A. A
NeuroImage, 111: 562–-579, May 2015

D. Saltukoglu, J. Grünewald, N. Strohmeyer, Robert Bensch, M. Ulbrich, Olaf Ronneberger, M. Simons
Molecular Biology of the Cell, 26(24): 4373--4386, Dec 2015

T. Yasunaga, S. Hoff, C. Schell, M. Helmstädter, O. Kretz, S. Kuechlin, T. Yakulov, C. Engel, B. Müller, Robert Bensch, Olaf Ronneberger, T. Huber, S. Lienkamp, G. Walz
Journal of Cell Biology, 211(5): 963--973, 2015

P. Nuske, Olaf Ronneberger, N. Karadimitriou, R. Helmig, S. Hassanizadeh
International Journal of Heat and Mass Transfer, 88: 822--835, 2015

D. Epting, K. Slanchev, C. Boehlke, S. Hoff, N. Loges, T. Yasunaga, L. Indorf, S. Nestel, S. Lienkamp, H. Omran, W. Kuehn, Olaf Ronneberger, G. Walz, a. Kramer-Zucker
Development, 142(1): 174--184, Jan 2015

Conference

Medical Image Computing and Computer-Assisted Intervention (MICCAI), Springer, LNCS, Vol.9351: 234--241, 2015


 
2014
Journal
Thorsten Schmidt, T. Pasternak, Kun Liu, T. Blein, D. Aubry-Hivet, A. Dovzhenko, J. Dürr, W. Teale, F. Ditengou, Hans Burkhardt, Olaf Ronneberger, K. Palme
The Plant Journal, 77(5): 806--814, Mar 2014

D. Kostro, Ahmed Abdulkadir, A. Durr, R. Roos, B. Leavitt, H. Johnson, D. Cash, S. Tabrizi, R. Scahill, Olaf Ronneberger, S. Kloeppel
NeuroImage, 98: 405--415, Sep 2014

D. Vonwil, J. Christensen, S. Fischer, Olaf Ronneberger, V. Shastri
Molecular Imaging and Biology, 16(3): 350--361, 2014


Conference

Ahmed Abdulkadir, J. Peter, Olaf Ronneberger, Thomas Brox, S. Kloeppel
Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2014 - CADDementia Challenge, 2014

Ahmed Abdulkadir, Olaf Ronneberger, S. Tabrizi, S. Kloeppel
International Workshop on Pattern Recognition in Neuroimaging (PRNI) 2014: 1-4, 2014

Kun Liu, S. Lienkamp, A. Shindo, J. Wallingford, G. Walz, Olaf Ronneberger
IEEE International Symposium on Biomedical Imaging (ISBI): 298--301, 2014

Dominic Mai, J. Dürr, K. Palme, Olaf Ronneberger
German Conference on Pattern Recognition (GCPR): 453--463, 2014

Dominic Mai, J. Dürr, K. Palme, Olaf Ronneberger
British Machine Vision Conference (BMVC), 2014
 
2013
Journal
R. Mikut, T. Dickmeis, W. Driever, P. Geurts, F. Hamprecht, B. Kausler, M. Ledesma-Carbayo, R. Marée, K. Mikula, P. Pantazis, Olaf Ronneberger, A. Santos, R. Stotzka, U. Strähle, N. Peyriéras
Zebrafish, 10(3): 401--421, Aug 2013

V. Morath, Margret Keuper, M. Rodriguez-Franco, S. Deswal, G. Fiala, B. Blumenthal, D. Kaschek, J. Timmer, G. Neuhaus, S. Ehl, Olaf Ronneberger, W. Schamel
Frontiers in Bioscience, Elite, 5: 533-545, 2013

Ahmed Abdulkadir, Olaf Ronneberger, R. Wolf, B. Pfleiderer, C. Saftf, S. Klöppel
Current Alzheimer Research, 10(2): 125--134, 2013



Conference

Dominic Mai, Philipp Fischer, T. Blein, J. Dürr, K. Palme, Thomas Brox, Olaf Ronneberger
Pattern Recognition (GCPR 2013), Springer, LNCS, Vol.8142: 205-214, 2013

Kun Liu, Thorsten Schmidt, T. Blein, J. Dürr, K. Palme, Olaf Ronneberger
IEEE International Symposium on Biomedical Imaging (ISBI): 422--425, 2013


Thorsten Schmidt, J. Dürr, Margret Keuper, T. Blein, K. Palme, Olaf Ronneberger
IEEE 10th International Symposium on Biomedical Imaging (ISBI): 169--172, 2013
 
2012
Journal

S. Lienkamp, Kun Liu, C. Karner, T. Carroll, Olaf Ronneberger, J. Wallingford, G. Walz
Nature Genetics, 44(12): 1382--1387, Dec 2012

B. Greese, K. Wester, Robert Bensch, Olaf Ronneberger, J. Timmer, M. Hülskamp, C. Fleck
IET Systems Biology, 6(4): 143--153, 2012



S. Ernst, Kun Liu, S. Agarwala, N. Moratscheck, M. Avci, D. Nogare, A. Chitnis, Olaf Ronneberger, V. Lecaudey
Development, 139(24): 4571--4581, 2012

Conference

Pattern Recognition (Proc. DAGM), Springer, LNCS, Vol.7476: 83--92, 2012

IEEE International Symposium on Biomedical Imaging (ISBI): 1292 - 1295 , 2012

IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2012

Others

 
2011
Journal
S. Klöppel, Ahmed Abdulkadir, S. Hadjidemetriou, S. Issleib, L. Frings, T. Thanh, I. Mader, S. Teipel, M. Hüll, Olaf Ronneberger
NeuroImage, 57(2): 416-422, 2011


Conference

H. Skibbe, M. Reisert, Olaf Ronneberger, Hans Burkhardt
IEEE International Symposium on Biomedical Imaging (ISBI): 728--733, 2011

Lingyu Ma, M. Reisert, C. Wirth, C. Hunte, Olaf Ronneberger, Hans Burkhardt
IEEE International Symposium on Biomedical Imaging (ISBI): 1943--1949, 2011

IEEE International Symposium on Biomedical Imaging (ISBI): 973 - 978, 2011

IEEE International Symposium on Biomedical Imaging (ISBI): 899 -- 904 , 2011

IEEE International Symposium on Biomedical Imaging (ISBI): 1719--1722, 2011


Others

 
2010
Journal
S. Lienkamp, A. Ganner, C. Boehlke, Thorsten Schmidt, S. Arnold, T. Schäfer, D. Romaker, J. Schuler, S. Hoff, C. Powelske, A. Eifler, C. Krönig, A. Bullerkotte, R. Nitschke, E. Kuehn, E. Kim, Hans Burkhardt, Thomas Brox, Olaf Ronneberger, J. Gloy, G. Walz
Proceedings of the National Academy of Sciences, 107(47): 20388-20393, 2010

M. Schlachter, M. Reisert, C. Herz, F. Schluermann, S. Lassmann, M. Werner, Hans Burkhardt, Olaf Ronneberger
IEEE Transactions on Medical Imaging, 29(8): 1485--1495, 2010

D. Saur, Olaf Ronneberger, D. Kummerer, I. Mader, C. Weiller, S. Klöppel
Brain, 133(4): 1252-1264, 2010

Conference

H. Skibbe, M. Reisert, Thorsten Schmidt, K. Palme, Olaf Ronneberger, Hans Burkhardt
Pattern Recognition (Proc. DAGM), Springer Berlin / Heidelberg, LNCS, Vol.6376: 412-421, 2010

IEEE International Conference on Pattern Recognition (ICPR): 2254-2257, 2010

IEEE International Conference on Pattern Recognition: 2784-2787, 2010

 
2009
Journal
M. Emmenlauer, Olaf Ronneberger, A. Ponti, P. Schwarb, A. Griffa, A. Filippi, R. Nitschke, W. Driever, Hans Burkhardt
Journal of Microscopy, 233(1): 42--60, 2009

IEEE Transactions on Pattern Analysis and Machine Intelligence, 31(9): 1715--1722, 2009

Conference


Qing Wang, Olaf Ronneberger, E. Schulze, R. Baumeister, Hans Burkhardt
Pattern Recognition (Proc. DAGM), Springer, LNCS, Vol.10: 542--551, 2009


Robert Bensch, Olaf Ronneberger, B. Greese, C. Fleck, K. Wester, M. Hülskamp, Hans Burkhardt
IEEE International Symposium on Biomedical Imaging (ISBI): 742--745, 2009

 
2008
Journal
Olaf Ronneberger, D. Baddeley, F. Scheipl, P. Verveer, Hans Burkhardt, C. Cremer, L. Fahrmeir, T. Cremer, B. Joffe
Chromosome Research, 16(3): 523-562, May 2008

Conference

J. Fehr, Olaf Ronneberger, J. Schulz, Thorsten Schmidt, M. Reisert, Hans Burkhardt
Proceedings of Computer Graphics and Imaging (CGIM): 276--285, 2008


Ausgezeichnete Informatikdissertationen 2007, Gesellschaft für Informatik, 2008

Others

Technical Report 1, IIF-LMB, Computer Science Department, University of Freiburg (1), 2008
 
2007

Conference
Pattern Recognition (Proc. DAGM), Springer, LNCS: 304--313, 2007

Pattern Recognition (Proc. DAGM), LNCS: 415--424, 2007


M. Emmenlauer, Olaf Ronneberger, M. Temerinac, Hans Burkhardt, A. Filippi, R. Nitschke, W. Driever
49th Symposium of the Society for Histochemistry, 2007

Others

PhD thesis from Albert-Ludwigs-Universität Freiburg, 2007
 
2006
Journal
S. Scharring, E. Schultz, U. Heimann, R. Gehrig, C. Defila, B. Kühler, H. Burkhardt, Olaf Ronneberger, Qing Wang, A. Brandenburg, G. Sulz, M. Ehr, D. Giel, M. Fratz, W. Koch, W. Dunkhorst, H. Lüdding, W. Müller, G. Breitfuss
Nachrichtenblatt des Deutschen Pflanzenschutzdienstes, 58: 309-314, 2006

K. Gaus, P. Rösch, R. Petry, K. Peschke, Olaf Ronneberger, Hans Burkhardt, K. Baumann, a.
Biopolymers, 82(4): 286--290, 2006

P. Rösch, M. Harz, K. Peschke, Olaf Ronneberger, Hans Burkhardt, J. Popp
Biopolymers, 82(4): 312--316, 2006

P. Rösch, M. Harz, K. Peschke, Olaf Ronneberger, Hans Burkhardt, A. Schule, G. Schmauz, M. Lankers, S. Hofer, H. Thiele, H. Motzkus, J.
Analytical Chemistry, 78(7): 2163--2170, 2006

Conference

Proceedings of the Muscle CIS Coin Competition Workshop, Berlin, Germany: 19--31, 2006

J. Popp, P. Rosch, M. Harz, M. Schmitt, K. Peschke, Olaf Ronneberger, H.
Proc. SPIE Photonics, Devices, and Systems III, SPIE, 2006

P. Rösch, M. Harz, M. Schmitt, K. Peschke, Olaf Ronneberger, Hans Burkhardt, H. Motzkus, M. Lankers, S. Hofer, H. Thiele, J. Popp
Proc. Biomedical Vibrational Spectroscopy III: Advances in Research and Industry, SPIE, 2006

J. Schulz, Thorsten Schmidt, Olaf Ronneberger, Hans Burkhardt, T. Pasternak, A. Dovzhenko, K. Palme
Pattern Recognition (Proc. DAGM), Springer, Vol.4174/2006: 182--191, 2006

S. Scharring, A. Brandenburg, G. Breitfuss, Hans Burkhardt, W. Dunkhorst, M. Ehr, M. Fratz, D. Giel, U. Heimann, W. Koch, H. Lödding, W. Müller, Olaf Ronneberger, E. Schultz, G. Sulz, Q.
Biophotonics: Visions for Better Health Care: 31-88, 2006

 
2005
Journal

P. Rösch, M. Harz, K. Peschke, Olaf Ronneberger, Hans Burkhardt, H. Motzkus, M. Lankers, S. Hofer, H. Thiele, J. Popp
Applied and Environmental Microbiology, 71: 1626-1637, 2005

Conference



E. Schultz, U. Heimann, S. Scharring, A. Brandenburg, M. von Ehr, G. Sulz, Hans Burkhardt, Olaf Ronneberger, Qing Wang, W. Koch, W. Dunkhorst, H. Lödding, W. Müller, G. Breitfuss
98th Annual Conference and Exhibition of the Air and Waste Management Association, 2005
 
2002
Journal

Conference

 
2000
Journal
J. Kompenhans, M. Raffel, L. Dieterle, T. Dewhirst, H. Vollmers, K. Ehrenfried, C. Willert, K. Pengel, C. Köhler, A. Schröder, Olaf Ronneberger
J. Vis., 2(3,4): 229--244, 2000

Conference

Olaf Ronneberger, U. Heimann, V. Dietze, E. Schultz, Hans Burkhardt, a.
2nd European Symposium on Aerobiology, 2000
 
1998

Conference
Olaf Ronneberger, M. Raffel, J. Kompenhans
9th international symposium on applications of laser techniques, 1998

Others

 
1995
Journal


Awards

2005 DAGM Award for "Voxel-Wise Gray Scale Invariants for Simultaneous Segmentation and Classification"
2006 DAGM Award for "Fast scalar and vectorial grayscale based invariant features for 3d cell nuclei localization and classification"
2006 Competition winning program, MUSCLE CIS Coin Recognition Competition
2008 nominated for the GI-Dissertationspreis 2007 (best Dissertation in Computer Science in Germany, Austria and Switzerland, 2007) of the Gesellschaft für Informatik

Pollenmonitor on TV

17.3.2005: The first prototype of our Pollenmonitor, developed within the OMNIBUSS project was presented in a 6 minute long report in 3sat "nano". Thanks to the journalist Michael Ringesiep for this great work and for providing a digital version of this report: