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Burkhardt's with Publications

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2014
Journal
The iRoCS Toolbox – 3D Analysis of the Plant Root Apical Meristem at Cellular Resolution   doi> Code/data
Thorsten Schmidt, T. Pasternak, Kun Liu, T. Blein, D. Aubry-Hivet, A. Dovzhenko, J. Dürr, W. Teale, F. Ditengou, Hans Burkhardt, Olaf Ronneberger, K. Palme
The Plant Journal, 77(5): 806--814, Mar 2014
 
2012
Journal
ViBE-Z: A Framework for 3D Virtual Colocalization Analysis in Zebrafish Larval Brains   doi>
Olaf Ronneberger, Kun Liu, M. Rath, D. Rueß, T. Mueller, Henrik Skibbe, Benjamin Drayer, Thorsten Schmidt, A. Filippi, R. Nitschke, Thomas Brox, Hans Burkhardt, W. Driever
Nature Methods, 9(7): 735-742, 2012
Fast rotation invariant 3D feature computation utilizing efficient local neighborhood operators   doi> Code/data
Henrik Skibbe, M. Reisert, Thorsten Schmidt, Thomas Brox, Olaf Ronneberger, Hans Burkhardt
IEEE Transactions on Pattern Analysis and Machine Intelligence, 34(8): 1563 - 1575 , 2012
Multiview deblurring for 3-D images from light sheet based fluorescence microscopy   doi> Code/data
Maja Temerinac-Ott, Olaf Ronneberger, Peter Ochs, W. Driever, Thomas Brox, Hans Burkhardt
IEEE Transactions on Image Processing, 21(4): 1863-1873, 2012

Conference
Blind Deconvolution with PSF Regularization for Wide-field Microscopy   Paperdeconv_keuper.pdf
Margret Keuper, Maja Temerinac-Ott, J. Padeken, P. Heun, Thomas Brox, Hans Burkhardt, Olaf Ronneberger
IEEE International Symposium on Biomedical Imaging (ISBI): 1292 - 1295 , 2012
 
2011

Conference
spherical bessel filter for 3d object detection   Paper2011_Skibbe_ISBI.pdf doi>
H. Skibbe, M. Reisert, Olaf Ronneberger, Hans Burkhardt
IEEE International Symposium on Biomedical Imaging (ISBI): 728--733, 2011
Alpha helix prediction based on metropolis-hastings sampling   Paper2011_Ma_ISBI.pdf doi>
Lingyu Ma, M. Reisert, C. Wirth, C. Hunte, Olaf Ronneberger, Hans Burkhardt
IEEE International Symposium on Biomedical Imaging (ISBI): 1943--1949, 2011
Hierarchical Markov Random Fields for Mast Cell Segmentation in Electron Microscopic Recordings   PaperMastCells_paper.pdf
Margret Keuper, Thorsten Schmidt, M. Rodriguez-Franco, W. Schamel, Thomas Brox, Hans Burkhardt, Olaf Ronneberger
IEEE International Symposium on Biomedical Imaging (ISBI): 973 - 978, 2011
Spatially-Variant Lucy-Richardson Deconvolution for Multiview Fusion of Microscopical 3D Images   PaperTemerinacISBI2011.pdf doi>
Maja Temerinac-Ott, Olaf Ronneberger, R. Nitschke, W. Driever, Hans Burkhardt
IEEE International Symposium on Biomedical Imaging (ISBI): 899 -- 904 , 2011

Others
Multiview Deblurring for 3-D Images from Light Sheet based Fluorescence Microscopy - Supporting Online Material   PaperSupportingOnlineMaterial.pdf
Maja Temerinac-Ott, Olaf Ronneberger, Peter Ochs, W. Driever, Thomas Brox, Hans Burkhardt
Technical Report 266, University of Freiburg(266), 2011
 
2010
Journal
Inversin relays Frizzled-8 signals to promote proximal pronephros development   doi>
S. Lienkamp, A. Ganner, C. Boehlke, Thorsten Schmidt, S. Arnold, T. Schäfer, D. Romaker, J. Schuler, S. Hoff, C. Powelske, A. Eifler, C. Krönig, A. Bullerkotte, R. Nitschke, E. Kuehn, E. Kim, Hans Burkhardt, Thomas Brox, Olaf Ronneberger, J. Gloy, G. Walz
Proceedings of the National Academy of Sciences, 107(47): 20388-20393, 2010
Harmonic Filters for 3D Multi-Channel Data: Rotation Invariant Detection of Mitoses in Colorectal Cancer   Paper2010_Schlachter_TMI.pdf doi>
M. Schlachter, M. Reisert, C. Herz, F. Schluermann, S. Lassmann, M. Werner, Hans Burkhardt, Olaf Ronneberger
IEEE Transactions on Medical Imaging, 29(8): 1485--1495, 2010

Conference
3D Object Detection Using a Fast Voxel-Wise Local Spherical Fourier Tensor Transformation   Paper2010_Skibbe_DAGM.pdf doi>
H. Skibbe, M. Reisert, Thorsten Schmidt, K. Palme, Olaf Ronneberger, Hans Burkhardt
Pattern Recognition (Proc. DAGM), Springer Berlin / Heidelberg, LNCS, Vol.6376: 412-421, 2010
Robust Identification of Locally Planar Objects Represented by 2D Point Clouds under Affine Distortions   PaperDAGM2010.pdf
Dominic Mai, Thorsten Schmidt, Hans Burkhardt
Pattern Recognition (Proc. DAGM), Springer, LNCS: 91--100, 2010
3D Deformable Surfaces with Locally Self-Adjusting Parameters - A Robust Method to Determine Cell Nucleus Shapes  
Margret Keuper, Thorsten Schmidt, J. Padeken, P. Heun, K. Palme, Hans Burkhardt, Olaf Ronneberger
IEEE International Conference on Pattern Recognition (ICPR): 2254-2257, 2010
Evaluation of a New Point Clouds Registration Method based on Group Averaging Features   PaperICPR2010Temerinac.pdf doi>
Maja Temerinac-Ott, Margret Keuper, Hans Burkhardt
IEEE International Conference on Pattern Recognition, IEEE: 2452--2455, 2010
Mean Shift Gradient Vector Flow: A Robust External Force Field for 3D Active Surfaces  
Margret Keuper, J. Padeken, P. Heun, Hans Burkhardt, Olaf Ronneberger
IEEE International Conference on Pattern Recognition: 2784-2787, 2010
SHREC10 Track: Protein Model Classification   doi>
L. Mavridis, V. Venkatraman, D. Ritchie, N. Morikawa, R. Andonov, A. Cornu, N. Malod-Dognin, J. Nicolas, Maja Temerinac-Ott, M. Reisert, Hans Burkhardt, A. Axenopoulos, P. Daras
Eurographics Workshop on 3D Object Retrieval, Eurographics Association: 117--124, 2010
Semi-Supervised Learning of Edge Filters for Volumetric Image Segmentation   Paperpaper-filterlearning.pdf doi>
Margret Keuper, Robert Bensch, K. Voigt, A. Dovzhenko, K. Palme, Hans Burkhardt, Olaf Ronneberger
32nd DAGM Symposium, Springer, LNCS: 462--471, 2010
 
2009
Journal
XuvTools: free, fast and reliable stitching of large 3D datasets   Paper2009_Emmenlauer_JMI.pdf doi>
M. Emmenlauer, Olaf Ronneberger, A. Ponti, P. Schwarb, A. Griffa, A. Filippi, R. Nitschke, W. Driever, Hans Burkhardt
Journal of Microscopy, 233(1): 42--60, 2009
Rotational Invariance Based on Fourier Analysis in Polar and Spherical Coordinates   Paperwa_ro_bu_pami09.pdf doi>
Qing Wang, Olaf Ronneberger, Hans Burkhardt
IEEE Transactions on Pattern Analysis and Machine Intelligence, 31(9): 1715--1722, 2009

Conference
Increasing the Dimension of Creativity in Rotation Invariant Feature Design Using 3D Tensorial Harmonics   Paper2009_Skibbe_DAGM.pdf doi>
Henrik Skibbe, M. Reisert, Olaf Ronneberger, Hans Burkhardt
Pattern Recognition (Proc. DAGM), Springer, LNCS: 141-150, 2009
Using Lateral Coupled Snakes for Modeling the Contours of Worms   Paper2009_Wang_DAGM.pdf
Qing Wang, Olaf Ronneberger, E. Schulze, R. Baumeister, Hans Burkhardt
Pattern Recognition (Proc. DAGM), Springer, LNCS, Vol.10: 542--551, 2009
Fast Computation of 3D Spherical Fourier Harmonic Descriptors - A Complete Orthonormal Basis for a Rotational Invariant Representation of Three-Dimensional Objects   Paper2009_Skibbe_3DIM.pdf doi>
Henrik Skibbe, M. Reisert, Qing Wang, Olaf Ronneberger, Hans Burkhardt
IEEE International Workshop on 3-D Digital Imaging and Modeling (3DIM 2009), in conjunction with the ICCV 2009: 1863--1869 , 2009
Image Analysis of Arabidopsis Trichome Patterning in 4D Confocal Datasets   Paperpaper-Bensch2009.pdf doi>
Robert Bensch, Olaf Ronneberger, B. Greese, C. Fleck, K. Wester, M. Hülskamp, Hans Burkhardt
IEEE International Symposium on Biomedical Imaging (ISBI): 742--745, 2009
Multichannel image restoration based on optimization of the structural similarity index   PaperPaper_multiview_ssim.pdf doi>
Maja Temerinac-Ott, Hans Burkhardt
IEEE Asilomar Conference on Signals, Systems and Computers, IEEE: 812--816 , 2009
A 3D Active Surface Model for the accurate Segmentation of Drosophila Schneider Cell Nuclei and Nucleoli   Paperasm_drosophila.pdf
Margret Keuper, J. Padeken, P. Heun, Hans Burkhardt, Olaf Ronneberger
Advances in Visual Computing: 865-874, 2009
 
2008
Journal
Spatial quantitative analysis of fluorescently labeled nuclear structures: problems, methods, pitfalls   doi>
Olaf Ronneberger, D. Baddeley, F. Scheipl, P. Verveer, Hans Burkhardt, C. Cremer, L. Fahrmeir, T. Cremer, B. Joffe
Chromosome Research, 16(3): 523-562, May 2008

Conference
Invariance via Group-Integration: A Feature Framework for 3D Biomedical Image Analysis  
J. Fehr, Olaf Ronneberger, J. Schulz, Thorsten Schmidt, M. Reisert, Hans Burkhardt
Proceedings of Computer Graphics and Imaging (CGIM): 276--285, 2008
Fast and robust segmentation of spherical particles in volumetric data sets from brightfield microscopy   Paper2008_Ronneberger_ISBI.pdf doi>
Olaf Ronneberger, Qing Wang, Hans Burkhardt
IEEE International Symposium on Biomedical Imaging (ISBI): 372--375, 2008

Display the complete list (54 publications)
1   2     »