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Schmidt's with Publications

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17 publications
 
2014
Journal
The iRoCS Toolbox – 3D Analysis of the Plant Root Apical Meristem at Cellular Resolution   doi> Code/data
Thorsten Schmidt, T. Pasternak, Kun Liu, T. Blein, D. Aubry-Hivet, A. Dovzhenko, J. Dürr, W. Teale, F. Ditengou, Hans Burkhardt, Olaf Ronneberger, K. Palme
The Plant Journal, 77(5): 806--814, Mar 2014
Rotation-Invariant HOG Descriptors using Fourier Analysis in Polar and Spherical Coordinates   doi> Code/data
Kun Liu, Henrik Skibbe, Thorsten Schmidt, T. Blein, K. Palme, Thomas Brox, Olaf Ronneberger
International Journal of Computer Vision, 106(3): 342-364, 2014
 
2013
Journal
Variational attenuation correction in two-view confocal microscopy   PaperSchmidt2013VariationalAttenuationCorrectionInTwo-ViewConfocalMicroscopy.pdf doi>
Thorsten Schmidt, J. Dürr, Margret Keuper, T. Blein, K. Palme, Olaf Ronneberger
BMC Bioinformatics, 14(1): 366, Dec 2013

Conference
Joint 3D Cell Segmentation and Classification in the Arabidopsis Root using Energy Minimization and Shape Priors   doi>
Kun Liu, Thorsten Schmidt, T. Blein, J. Dürr, K. Palme, Olaf Ronneberger
IEEE International Symposium on Biomedical Imaging (ISBI): 422--425, 2013
Blind deconvolution of widefield fluorescence microscopic data by regularization of the optical transfer function (OTF)   Paperdeconv.pdf
Margret Keuper, Thorsten Schmidt, Maja Temerinac-Ott, J. Padeken, P. Heun, Olaf Ronneberger, Thomas Brox
IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2013
Variational Attenuation Correction of Two-View Confocal Microscopic Recordings   doi>
Thorsten Schmidt, J. Dürr, Margret Keuper, T. Blein, K. Palme, Olaf Ronneberger
IEEE 10th International Symposium on Biomedical Imaging (ISBI): 169--172, 2013
 
2012
Journal
ViBE-Z: A Framework for 3D Virtual Colocalization Analysis in Zebrafish Larval Brains   doi>
Olaf Ronneberger, Kun Liu, M. Rath, D. Rueß, T. Mueller, Henrik Skibbe, Benjamin Drayer, Thorsten Schmidt, A. Filippi, R. Nitschke, Thomas Brox, Hans Burkhardt, W. Driever
Nature Methods, 9(7): 735-742, 2012
Fast rotation invariant 3D feature computation utilizing efficient local neighborhood operators   doi> Code/data
Henrik Skibbe, M. Reisert, Thorsten Schmidt, Thomas Brox, Olaf Ronneberger, Hans Burkhardt
IEEE Transactions on Pattern Analysis and Machine Intelligence, 34(8): 1563 - 1575 , 2012

Conference
Modeling of Sparsely Sampled Tubular Surfaces Using Coupled Curves   PaperCoupledBSplinesForPointCloudAxisFitting.pdf
Thorsten Schmidt, Margret Keuper, T. Pasternak, K. Palme, Olaf Ronneberger
Pattern Recognition (Proc. DAGM), Springer, LNCS, Vol.7476: 83--92, 2012
 
2011

Conference
Hierarchical Markov Random Fields for Mast Cell Segmentation in Electron Microscopic Recordings   PaperMastCells_paper.pdf
Margret Keuper, Thorsten Schmidt, M. Rodriguez-Franco, W. Schamel, Thomas Brox, Hans Burkhardt, Olaf Ronneberger
IEEE International Symposium on Biomedical Imaging (ISBI): 973 - 978, 2011
3D Rotation-Invariant Description from Tensor Operation on Spherical HOG Field   PaperBMVC2011_79_final.pdf doi>
Kun Liu, Henrik Skibbe, Thorsten Schmidt, T. Blein, K. Palme, Olaf Ronneberger
British Machine Vision Conference (BMVC), Aug 2011
 
2010
Journal
Inversin relays Frizzled-8 signals to promote proximal pronephros development   doi>
S. Lienkamp, A. Ganner, C. Boehlke, Thorsten Schmidt, S. Arnold, T. Schäfer, D. Romaker, J. Schuler, S. Hoff, C. Powelske, A. Eifler, C. Krönig, A. Bullerkotte, R. Nitschke, E. Kuehn, E. Kim, Hans Burkhardt, Thomas Brox, Olaf Ronneberger, J. Gloy, G. Walz
Proceedings of the National Academy of Sciences, 107(47): 20388-20393, 2010

Conference
3D Object Detection Using a Fast Voxel-Wise Local Spherical Fourier Tensor Transformation   Paper2010_Skibbe_DAGM.pdf doi>
H. Skibbe, M. Reisert, Thorsten Schmidt, K. Palme, Olaf Ronneberger, Hans Burkhardt
Pattern Recognition (Proc. DAGM), Springer Berlin / Heidelberg, LNCS, Vol.6376: 412-421, 2010
Robust Identification of Locally Planar Objects Represented by 2D Point Clouds under Affine Distortions   PaperDAGM2010.pdf
Dominic Mai, Thorsten Schmidt, Hans Burkhardt
Pattern Recognition (Proc. DAGM), Springer, LNCS: 91--100, 2010
3D Deformable Surfaces with Locally Self-Adjusting Parameters - A Robust Method to Determine Cell Nucleus Shapes  
Margret Keuper, Thorsten Schmidt, J. Padeken, P. Heun, K. Palme, Hans Burkhardt, Olaf Ronneberger
IEEE International Conference on Pattern Recognition (ICPR): 2254-2257, 2010
 
2008

Conference
Invariance via Group-Integration: A Feature Framework for 3D Biomedical Image Analysis  
J. Fehr, Olaf Ronneberger, J. Schulz, Thorsten Schmidt, M. Reisert, Hans Burkhardt
Proceedings of Computer Graphics and Imaging (CGIM): 276--285, 2008
 
2006

Conference
Fast Scalar and Vectorial Grayscale Based Invariant Features for 3D Cell Nuclei Localization and Classification   Paperschulz_dagm06.pdf doi>
J. Schulz, Thorsten Schmidt, Olaf Ronneberger, Hans Burkhardt, T. Pasternak, A. Dovzhenko, K. Palme
Pattern Recognition (Proc. DAGM), Springer, Vol.4174/2006: 182--191, 2006

17 publications