Thorsten Falk PhD 3D Image Analysis Lab Department of Computer Science University of Freiburg Germany Contact: Georges-Köhler-Allee, building 052, 2nd floor, room 01-42 79110 Freiburg Phone: +49 761 203 8274 E-Mail:

Personal	Projects	Publications	Teaching

Lectures

Quantitative Methoden - Schwerpunkt Translationale Biologie
Summer term 2017

Engineering meets Biology
Winter term 2016/17

Assistance in Computer Vision I
Winter term 2013/14

Assistance in Computer Science II
Summer term 2012

Assistance in Pattern Recognition, Image Processing and Computer Graphics
Winter term 2010/11

Assistance in Fundamentals of Pattern Recognition
Winter term 2008/09

Seminars

Supervision in Deep Learning for Bio-Medical Image Analysis
Winter term 2016/17, Summer term 2016, 2017

Supervision in Current works in Computer Vision
Winter term 2010/11, 2011/12, 2012/13, 2013/14, 2014/15, Summer term 2011

Proseminar: Image Processing Toolbox with ImageJ
Organization: Winter term 2006/07, 2008/09
Supervision: Winter term 2009/10, 2010/11, 2011/12, 2012/13, 2013/14

Supervision in Algorithms for Clusteranalysis
Summer term 2010

Supervision in Methods and Algorithms for Image Segmentation
Summer term 2007, 2009

Supervision in Robot assisted multimodal acquisition, reconstruction and recognition of 3D objects
Summer term 2006

Supervision in Biometry - Methods for Iris-, Fingerprint- und Face Recognition
Winter term 2005/06

Lab Courses

Deep Learning
Winter term 2016/17

GPU Programming
Winter term 2015/16, Summer term 2017

Camera Calibration
Winter term 2005/06, 2006/07, 2007/08, 2008/09, 2009/10, 2010/11

Morphology
Summer term 2006, 2007, 2008, 2009, 2010

Supervised Theses

Andreas Behr
Automatische Zelltyp-Bestimmung im Wurzelspitzenstammzellenbereich der Spezies Arabidopsis thaliana
Master thesis, May 2015 - November 2015

Katherina Renz
Vergleich verschiedener Trackingverfahren in dreidimensionalen Datensätzen
Diploma thesis, April 2010 - October 2010

Dominic Mai
Identifikation von Blaupunktrochen in Unterwasseraufnahmen
Presented at DAGM 2010: Robust Identification of Locally Planar Objects Represented by 2D Point Clouds under Affine Distortions
Diploma thesis, July 2009 - January 2010

Matthias Schmieder
Markerbasierte Registrierung mikroskopischer Zeit-Aufnahmen von Arabidopsis Thaliana mit Hilfe lokaler geometrischer Merkmale
Diploma thesis, June 2008 - December 2008

Matthias Schmieder
Detektion und Verfolgung fluoreszenzmarkierter biologischer Nanostrukturen
Student Research Project, October 2007 - April 2008

Matthias Schlachter
Quantitative Analyse mikroskopischer Aufnahmen von Moos-Protoplasten
Student Research Project, November 2006 - May 2007