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3D Image Analysis

3D Image Analysis

Type: Spezialvorlesung
Credits: 2+2 SWS, 6 ECTS
Lecture by: Junior-Prof. Olaf Ronneberger
Time and Location: Lectures: Thursdays, 09:00-11:00, SR 02-017, Geb. 052 (Start at 22.10.2009)
Exercises: Fridays 09:00-11:00, SR 02-005, Geb. 052
Language:Slides: English,
Spoken language: English / German (nach Wunsch der Teilnehmer)
Exercises by:Junior-Prof. Olaf Ronneberger + n.n.

Overview

This course will introduce the basic concepts and techniques that are used in analysis of 3D images (volumetric data sets). The focus will be on data sets that are recorded in the biomedical research.

The exercises will focus on practical applications of the concepts, efficient 3D data handling and processing in C++, common libraries and tools in this area. The students are expected to write small programs, that solve given 3D image analysis tasks.

Content

(new lecture, contents will be updated during semester)

Prerequisites

  • Kursvorlesung Mustererkennung
  • Digitale Bildverarbeitung I
  • Programming skills (preferably in C++)

Lectures

(new lecture, contents will be updated during semester)

NumberDateTopicSlides
122.10.2009Introduction: Notation, 3D Imaging Techniques, Sample Applications 
229.10.2009The mathematics of image processing, basics of segmentation 
35.11.2009Level Set Methods, Homogeneous coordinates and basic transformations 
412.11.2009Graph Cut Segmentation 
519.11.2009Registration 1: Intesity based registration 

Exercises

please mail your solutions (only the c++ - files) to ronneber@informatik.uni-freiburg.de

NumberIssue DateDue DateExerciseAdditional MaterialSample Solution
1Fr, 30.10.2009Wed, 28.10.2009 Exercise_01.pdf whatisit_129x227x198_8bit.raw slices.cc
aip.cc
mip.cc
2Fr, 23.10.2009Wed, 4.11.2009
Extended to Fr, 6.11.2009		 Exercise_02.pdf   gaussfilter.cc
3Fr, 6.11.2009Wed, 11.11.2009 Exercise_03.pdf Artemisia_pollen_145x138x138_8bit.raw render_pollen_movie.cc
4Fr, 13.11.2009Wed, 25.11.2009 Exercise_04.pdf threepollen_221x269x484_8bit.raw  

Additional Material

(will appear here)

last changed: 2009-10-30 by Olaf Ronneberger