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Universität Freiburg - Institut für Informatik
Lehrstuhl für Mustererkennung und Bildverarbeitung (LMB)
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    |  | Professor:
    |  |-Prof. Dr.-Ing. Hans Burkhardt
    |  |-Junior-Prof. Dr. Olaf Ronneber...
    |  | Secretary:
    |  |-Cynthia Findlay
    |  | Research Ass.:
    |  |-Nikos Canterakis
    |  |-Robert Bensch
    |  |-Margret Keuper
    |  |-Lingyu Ma
    |  |-Dominik Ruess
    |  |-Matthias Schlachter
    |  |-Thorsten Schmidt
    |  |-Henrik Skibbe
    |  |-Maja Temerinac
    |  |-Qing Wang
    |  |-Wan Nural Jawahir
    |  | Tech. Staff:
    |  |-Stefan Teister
    |  | Students:
    |  | Visiting Scientists:
    |  | Former members:
    | [+]Alexandra Teynor
    |  |-Marco Reisert
    |  |-Janina Schulz
    | [+]Janis Fehr
    | [+]Claus Bahlmann
    |  |-Lothar Bergen
    |  |-Andreas Bieniek ()
    |  |-Gerd Brunner
    |  |-Da-chuan Cheng ()
    |  |-Mario Emmenlauer
    |  |-Bernard Haasdonk
    |  |-Alaa Halawani ()
    |  |-Ralf Jüngling ()
    |  |-Dimitrios Katsoulas ()
    |  |-Alina MOGA's home page ()
    |  |-Lin Mei
    |  |-K.-D.Peschke
    |  |-Stefan Rahmann ()
    |  |-Marc Schael ()
    |  |-Lokesh Setia
    | [+]Sven Siggelkow ()
    |  |-Sven Utcke ()
    |  |-XIAOFENG ZHANG ()
    |  | Former Visiting Scientists:
    |  |-Sebastien Lefevre
    |  |-Prof. Dr. Zhe-Ming Lu
    |  |-Yonghua Xie
    |  `-Xiaokang YANG
   [+]Research
   [+]Studien-, Diplom- und Bachelor... ()
   [+]Lectures
    |-Events
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   [+]Software
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Homepage of Mario Emmenlauer

Former research fellow
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Mario Emmenlauer Dipl. Inf. Mario Emmenlauer
Address LMB, Freiburg (outdated):
Chair of Pattern Recognition and Image Processing
Albert-Ludwigs-University
Georges-Koehler-Allee 052, room 01-017
D-79110 Freiburg i.Br., Germany
Address Bitplane AG, Zurich (current):
Bitplane AG
Badenerstrasse 682
8048 Zurich, Switzerland
Telephone: +49-(0)176-23463809
Email: mario AT emmenlauer.de

Scientific Interests

Biological and medical signal processing, 3D and 4D (3D + Time), registration of large scale image datasets, fusion, spine- and neuron-tracing. Platform-independant programming in C/C++, templates, compilers, 64bit, CPU/GPU programming.

Publications

  • M. Emmenlauer, O. Ronneberger, A. Ponti, P. Schwarb, A. Griffa, A. Filippi, R. Nitschke, W. Driever, and H. Burkhardt.
    "Xuvtools: Free, fast and reliable stitching of large 3d datasets"
    Journal of Microscopy (2009) Vol 233 Issue 1 pp. 42--60 (doi:10.1111/j.1365-2818.2008.03094.x)
    Paper (on publisher site, free access) [pdf]

  • M. Emmenlauer, O. Ronneberger, H. Burkhardt, A. Ponti, P. Schwarb, R. Nitschke, and W. Driever.
    "XuvTools: Fast and reliable stitching of large 3D datasets"
    European Light Microscopy Initiative ELMI (2008)
    Poster [pdf]

  • M. Emmenlauer and O. Ronneberger and M. Temerinac and H. Burkhardt and A. Filippi and R. Nitschke and W. Driever
    "Fast Automatic Recombination of Multiple 3D Datasets for Large Volumes and High Dynamic Range (HDR)"
    49th Symposium of the Society for Histochemistry (2007)
    Poster [pdf]

  • Mario Emmenlauer
    "Feature- und Deformationsmodell-basierte Registrierung von 3D Volumendaten von Zebrafischen"
    Diploma thesis [pdf] [ps.gz], Diploma recital [pdf]

Projects

  • XuvTools: Free, Fast and Reliable Stitching of Large 3D Datasets
    XuvTools is a fully automatic software toolset for stitching very large 3D confocal microscope datasets (mosaics). Tiles have to be acquired without distortions, and need to have some overlap for the automatic placement to work. XuvTools is designed to be very fast and precise and to work without prior knowledge about recording positions (fully automatic).

Teaching

Links, Software



Last updated: 2009/08/19, Mario Emmenlauer