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Dipl. Inf. Mario Emmenlauer | |
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Address LMB, Freiburg (outdated): Chair of Pattern Recognition and Image Processing Albert-Ludwigs-University Georges-Koehler-Allee 052, room 01-017 D-79110 Freiburg i.Br., Germany |
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Address Bitplane AG, Zurich (current): Bitplane AG Badenerstrasse 682 8048 Zurich, Switzerland |
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| Telephone: | +49-(0)176-23463809 | |
| Email: |  |
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| Biological and medical signal processing, 3D and 4D (3D + Time), registration of large scale image datasets, fusion, spine- and neuron-tracing. Platform-independant programming in C/C++, templates, compilers, 64bit, CPU/GPU programming. |
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M. Emmenlauer, O. Ronneberger, A. Ponti, P. Schwarb, A. Griffa, A. Filippi, R. Nitschke, W. Driever, and H. Burkhardt.
"Xuvtools: Free, fast and reliable stitching of large 3d datasets"
Journal of Microscopy (2009) Vol 233 Issue 1 pp. 42--60 (doi:10.1111/j.1365-2818.2008.03094.x)
Paper (on publisher site, free access)
[pdf]
M. Emmenlauer, O. Ronneberger, H. Burkhardt, A. Ponti, P. Schwarb, R. Nitschke, and W. Driever.
"XuvTools: Fast and reliable stitching of large 3D datasets"
European Light Microscopy Initiative ELMI (2008)
Poster
[pdf]
M. Emmenlauer and O. Ronneberger and M. Temerinac and H. Burkhardt and A. Filippi and R. Nitschke and W. Driever
"Fast Automatic Recombination of Multiple 3D Datasets for Large Volumes and High Dynamic Range (HDR)"
49th Symposium of the Society for Histochemistry (2007)
Poster
[pdf]
Mario Emmenlauer
"Feature- und Deformationsmodell-basierte Registrierung von 3D Volumendaten von Zebrafischen"
Diploma thesis
[pdf]
[ps.gz],
Diploma recital
[pdf]
XuvTools: Free, Fast and Reliable Stitching of Large 3D Datasets
XuvTools is a fully automatic software toolset for stitching very large 3D
confocal microscope datasets (mosaics). Tiles have to be acquired without
distortions, and need to have some overlap for the automatic placement to
work.
XuvTools is designed to be very fast and precise and to work without
prior knowledge about recording positions (fully automatic).