Publications of Thomas Brox

Modelling long-term thermal comfort conditions in urban environments using a deep convolutional encoder-decoder as a computational shortcut doi>

F. Briegel, Osama Makansi, A. Matzarakis, Thomas Brox, A. Christen

Urban Climate, 47, Jan 2023

3D pose estimation enables virtual head fixation in freely moving rats Paper

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A. Schneider, Christian Zimmermann, M. Alyahyay, F. Steenbergen, Thomas Brox, I. Diester

Neuron, 110(13): 2080-2093, Jul 2022

Conserved structures of neural activity in sensorimotor cortex of freely moving rats allow cross-subject decoding Paper

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Svenja Melbaum, E. Russo, D. Eriksson, A. Schneider, D. Durstewitz, Thomas Brox, I. Diester

Nature Communications, 2022

Semi-Supervised Semantic Segmentation with High- and Low-level Consistency Paper

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Sudhanshu Mittal, Maxim Tatarchenko, Thomas Brox

IEEE Transactions on Pattern Analysis and Machine Intelligence, 43(4): 1369-1379, 2021

Deep learning is widely applicable to phenotyping embryonic development and disease doi>

T. Naert, Ö. Cicek, P. Ogar, M. Buergi, N. Shaidani, M. Kaminski, Y. Xu, K. Grand, M. Vujanovic, D. Prata, F. Hildebrandt, Thomas Brox, Olaf Ronneberger, F. Voigt, F. Helmchen, J. Loffing, M. Horb, H. Willsey, S. Lienkamp

Development, 148(21), 2021

MAIN: Multi-Attention Instance Network for video segmentation Paper

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J. León Alcázar, Maria A. Bravo, G. Jeanneret, A. Thabet, Thomas Brox, P. Arbeláez, B. Ghanem

Computer Vision and Image Understanding, 210: 103240, 2021

DeepTAM: Deep Tracking and Mapping with Convolutional Neural Networks Paper

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Huizhong Zhou, Benjamin Ummenhofer, Thomas Brox

International Journal of Computer Vision, 128: 756-769, 2020

Motion segmentation and multiple object tracking by correlation co-clustering Paper

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Margret Keuper, S. Tang, B. Andres, Thomas Brox, B. Schiele

IEEE Transactions on Pattern Analysis and Machine Intelligence, 42(1): 140-153, Jan 2020

U-Net – Deep Learning for Cell Counting, Detection, and Morphometry Paper

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Thorsten Falk, Dominic Mai, Robert Bensch, Özgün Çiçek, Ahmed Abdulkadir, Yassine Marrakchi, Anton Böhm, J. Deubner, Z. Jäckel, K. Seiwald, A. Dovzhenko, O. Tietz, C. Dal Bosco, S. Walsh, D. Saltukoglu, T. Tay, M. Prinz, K. Palme, M. Simons, I. Diester, Thomas Brox, Olaf Ronneberger

Nature Methods, 16: 67-70, 2019

Non-smooth non-convex Bregman minimization: unification and new algorithms Paper

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Peter Ochs, J. Fadili, Thomas Brox

Journal of Optimization Theory and Applications, 2019

Artistic style transfer for videos and spherical images Paper

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Manuel Ruder, Alexey Dosovitskiy, Thomas Brox

International Journal of Computer Vision, 126(11): 1199-1219, Nov 2018

What Makes Good Synthetic Training Data for Learning Disparity and Optical Flow Estimation? Paper

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Nikolaus Mayer, Eddy Ilg, Philipp Fischer, C. Hazirbas, D. Cremers, Alexey Dosovitskiy, Thomas Brox

International Journal of Computer Vision, 126(9): 942-960, 2018

Efficient and Robust Deep Networks for Semantic Segmentation Paper

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Gabriel Leivas Oliveira, C. Bollen, W. Burgard, Thomas Brox

The International Journal of Robotics Research (IJRR), 2017

An objective comparison of cell-tracking algorithms doi>

V. Ulman, M. Maška, K. Magnusson, Olaf Ronneberger, C. Haubold, N. Harder, P. Matula, P. Matula, D. Svoboda, M. Radojevic, I. Smal, K. Rohr, J. Jaldén, H. Blau, O. Dzyubachyk, B. Lelieveldt, P. Xiao, Y. Li, S. Cho, A. Dufour, J. Olivo-Marin, C. Reyes-Aldasoro, J. Solis-Lemus, Robert Bensch, Thomas Brox, J. Stegmaier, R. Mikut, S. Wolf, F. Hamprecht, T. Esteves, P. Quelhas, Ö. Demirel, L. Malmström, F. Jug, P. Tomancák, E. Meijering, A. Muñoz-Barrutia, M. Kozubek, C. Ortiz-de-Solor

Nature Methods, 14: 1141-1152, 2017

Global, Dense Multiscale Reconstruction for a Billion Points Paper

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Benjamin Ummenhofer, Thomas Brox

International Journal of Computer Vision, 125(1-3): 82-94, 2017

Spatiotemporal Deformable Prototypes for Motion Anomaly Detection doi> Code/data

Robert Bensch, N. Scherf, J. Huisken, Thomas Brox, Olaf Ronneberger

International Journal of Computer Vision, 122(3): 502--523, May 2017

Learning to Generate Chairs, Tables and Cars with Convolutional Networks Paper

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Alexey Dosovitskiy, J. Springenberg, Maxim Tatarchenko, Thomas Brox

IEEE Transactions on Pattern Analysis and Machine Intelligence, 39(4): 692-705, Apr 2017

Techniques for gradient based bilevel optimization with nonsmooth lower level problems Paper

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Peter Ochs, R. Ranftl, Thomas Brox, T. Pock

Journal of Mathematical Imaging and Vision, 56(2): 175-194, Oct 2016

Discriminative Unsupervised Feature Learning with Exemplar Convolutional Neural Networks Paper

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Alexey Dosovitskiy, Philipp Fischer, J. Springenberg, M. Riedmiller, Thomas Brox

IEEE Transactions on Pattern Analysis and Machine Intelligence, 38(9): 1734-1747, Oct 2016

q-Space Deep Learning: Twelve-Fold Shorter and Model-Free Diffusion MRI Scans Paper

V. Golkov, Alexey Dosovitskiy, J. Sperl, M. Menzel, M. Czisch, P. Sämann, Thomas Brox, D. Cremers

IEEE Transactions on Medical Imaging, 35(5), 2016

On iteratively reweighted algorithms for non-smooth non-convex optimization in computer vision Paper

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Peter Ochs, Alexey Dosovitskiy, Thomas Brox, T. Pock

SIAM Journal on Imaging Sciences, 8(1): 331-372, 2015

iPiasco: Inertial Proximal Algorithm for strongly convex Optimization Paper

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Peter Ochs, Thomas Brox, T. Pock

Journal of Mathematical Imaging and Vision, 53(2): 171-181, Oct 2015

iPiano: Inertial Proximal Algorithm for Non-convex Optimization Paper

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Peter Ochs, Y. Chen, Thomas Brox, T. Pock

SIAM Journal on Imaging Sciences, 7(2): 1388-1419, 2014

Rotation-Invariant HOG Descriptors using Fourier Analysis in Polar and Spherical Coordinates doi> Code/data

Kun Liu, Henrik Skibbe, Thorsten Schmidt, T. Blein, K. Palme, Thomas Brox, Olaf Ronneberger

International Journal of Computer Vision, 106(3): 342-364, 2014

Segmentation of moving objects by long term video analysis Paper

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Peter Ochs, J. Malik, Thomas Brox

IEEE Transactions on Pattern Analysis and Machine Intelligence, 36(6): 1187 - 1200, Jun 2014

ViBE-Z: A Framework for 3D Virtual Colocalization Analysis in Zebrafish Larval Brains doi>

Olaf Ronneberger, Kun Liu, M. Rath, D. Rueß, T. Mueller, Henrik Skibbe, Benjamin Drayer, Thorsten Schmidt, A. Filippi, R. Nitschke, Thomas Brox, Hans Burkhardt, W. Driever

Nature Methods, 9(7): 735-742, 2012

Region based pose tracking with occlusions using 3D models Paper

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C. Schmaltz, B. Rosenhahn, Thomas Brox, J. Weickert

Machine Vision and Applications, 23(3): 557-577, 2012

Fast rotation invariant 3D feature computation utilizing efficient local neighborhood operators doi> Code/data

Henrik Skibbe, M. Reisert, Thorsten Schmidt, Thomas Brox, Olaf Ronneberger, Hans Burkhardt

IEEE Transactions on Pattern Analysis and Machine Intelligence, 34(8): 1563 - 1575 , 2012

Fast joint estimation of silhouettes and dense 3D geometry from multiple images Paper

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K. Kolev, Thomas Brox, D. Cremers

IEEE Transactions on Pattern Analysis and Machine Intelligence, 34(3): 493-505, 2012

Multiview deblurring for 3-D images from light sheet based fluorescence microscopy doi> Code/data

Maja Temerinac-Ott, Olaf Ronneberger, Peter Ochs, W. Driever, Thomas Brox, Hans Burkhardt

IEEE Transactions on Image Processing, 21(4): 1863-1873, 2012

Stereoscopic scene flow computation for 3D motion understanding Paper

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A. Wedel, Thomas Brox, T. Vaudrey, C. Rabe, U. Franke, D. Cremers

International Journal of Computer Vision, 95(1): 29-51, 2011

Large displacement optical flow: descriptor matching in variational motion estimation Paper

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Thomas Brox, J. Malik

IEEE Transactions on Pattern Analysis and Machine Intelligence, 33(3): 500-513, 2011

Inversin relays Frizzled-8 signals to promote proximal pronephros development doi>

S. Lienkamp, A. Ganner, C. Boehlke, Thorsten Schmidt, S. Arnold, T. Schäfer, D. Romaker, J. Schuler, S. Hoff, C. Powelske, A. Eifler, C. Krönig, A. Bullerkotte, R. Nitschke, E. Kuehn, E. Kim, Hans Burkhardt, Thomas Brox, Olaf Ronneberger, J. Gloy, G. Walz

Proceedings of the National Academy of Sciences, 107(47): 20388-20393, 2010