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void | iRoCS::computeCellFeatures (atb::Array< int, 3 > const &L, ShellCoordinateTransform const &sct, double volumeThresholdUm, std::string const &outFileName, std::string const &featureGroup, int backgroundLabel=-1, bool connectedComponentLabeling=false, ProgressReporter *pr=NULL) |
| Compute cell shape features for the given segmentation masks aligned to the given iRoCS shell coordinate transform. More...
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double | iRoCS::computeConvexity (atb::Array< int, 3 > const &L, std::vector< blitz::TinyVector< atb::BlitzIndexT, 3 > > const &voxelSet, int nRandomPairs=100000) |
| Compute a convexity measure for a segment based on sample points. More...
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void | iRoCS::computeVoxelSetsPerLabel (atb::Array< int, 3 > const &L, blitz::Array< std::vector< blitz::TinyVector< atb::BlitzIndexT, 3 > >, 1 > &voxelSets, int backgroundLabel, ProgressReporter *pr=NULL) |
| For each label compute the vector of voxel positions with that label in L. More...
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void | iRoCS::extractRD (atb::Array< int, 3 > const &L, int label, blitz::TinyVector< double, 3 > const ¢er, blitz::TinyMatrix< double, 3, 3 > const &axes, blitz::TinyVector< double, 26 > &rd) |
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