iRoCS Toolbox  1.1.0
Namespaces | Functions
RootSegmentationWorker.hh File Reference
#include <config.hh>
#include <libProgressReporter/ProgressReporter.hh>
#include <libArrayToolbox/Array.hh>
Include dependency graph for RootSegmentationWorker.hh:

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Namespaces

 iRoCS
 

Functions

void iRoCS::segmentCells (atb::Array< double, 3 > &data, atb::Array< int, 3 > &segmentation, double gamma, int normalizationType, int medianWidthPx, double processingElementSizeUm, double varSigmaUm, double varEpsilon, float sigmaHessianUm, bool preDiffusion, int nDiffusionIterations, float zCompensationFactor, double kappa, float deltaT, float l1Threshold, float volumeThresholdUm, int boundaryThicknessPx, std::string const &debugFileName="", iRoCS::ProgressReporter *pr=NULL)
 
void iRoCS::varianceNormalization (blitz::Array< double, 3 > &data, blitz::TinyVector< double, 3 > const &elementSizeUm, double sigmaUm, double epsilon=1e-10, iRoCS::ProgressReporter *pr=NULL)