iRoCS Toolbox  1.1.0
Namespaces | Functions
AssignLayersToCellSegmentationWorker.hh File Reference
#include <config.hh>
#include <libArrayToolbox/Array.hh>
#include <libArrayToolbox/algo/ShellCoordinateTransform.hh>
#include <libProgressReporter/ProgressReporter.hh>
Include dependency graph for AssignLayersToCellSegmentationWorker.hh:

Go to the source code of this file.

Namespaces

 iRoCS
 

Functions

void iRoCS::assignLayersToSegmentation (atb::Array< int, 3 > const &L, ShellCoordinateTransform const &sct, double volumeThresholdUm3, std::string const &modelFileName, std::string const &featureFileName, std::string const &featureGroup, std::vector< std::string > &featureNames, std::string const &outFileName, std::string const &labelName, int backgroundLabel=1, ProgressReporter *pr=NULL)
 
void iRoCS::trainLayerAssignmentToSegmentation (std::vector< std::string > const &infiles, std::string const &segmentationName, std::string const &sctName, double volumeThresholdUm3, std::string const &modelFileName, std::vector< std::string > const &featureFileNames, std::string const &featureGroup, std::vector< std::string > &featureNames, std::vector< std::string > const &labelFileNames, std::string const &labelName, blitz::TinyVector< int, 2 > const &labelRange, bool computeFeatures, int backgroundLabel=1, ProgressReporter *pr=NULL)