iRoCS Toolbox  1.1.0
AttachIRoCSWorker.hh
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5  * Image Analysis Lab, University of Freiburg, Germany
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22 
23 #ifndef ATTACHIROCSWORKER_HH
24 #define ATTACHIROCSWORKER_HH
25 
26 #ifdef HAVE_CONFIG_H
27 #include <config.hh>
28 #endif
29 
31 #include <libArrayToolbox/iRoCS.hh>
32 
33 namespace iRoCS
34 {
35 
36  void attachIRoCS(
37  atb::IRoCS &iRoCS, std::vector<atb::Nucleus> &nuclei,
38  blitz::TinyVector<double,3> const &qcPositionUm, double kappa = 1.0,
39  double lambda = 0.0, double mu = 0.0, double searchRadiusUm = 0.0,
40  int nIterations = 1000, double tau = 0.1, ProgressReporter *pr = NULL);
41 
42 }
43 
44 #endif
The IRoCS class provides means to attach iRoCS to different kinds of processed root images...
Definition: iRoCS.hh:69
The intrinsic root coordinate system.
void attachIRoCS(ShellCoordinateTransform &sct, atb::Array< int, 3 > const &segmentation, int backgroundLabel, int downSampleRatio, double segmentLength, double margin, blitz::TinyVector< double, 3 > const &posQC=blitz::TinyVector< double, 3 >(-std::numeric_limits< double >::infinity()), blitz::TinyVector< double, 3 > const &xDirection=blitz::TinyVector< double, 3 >(-std::numeric_limits< double >::infinity()), std::string const &debugFileName="", atb::Array< double, 3 > *l=NULL, atb::Array< double, 3 > *r=NULL, atb::Array< double, 3 > *p=NULL, iRoCS::ProgressReporter *pr=NULL)