iRoCS Toolbox  1.1.0
LayerAssignmentWorker.hh
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5  * Image Analysis Lab, University of Freiburg, Germany
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22 
23 #ifndef LAYERASSIGNMENTWORKER_HH
24 #define LAYERASSIGNMENTWORKER_HH
25 
26 #ifdef HAVE_CONFIG_H
27 #include <config.hh>
28 #endif
29 
31 
32 #include <libArrayToolbox/Array.hh>
34 #include <libArrayToolbox/iRoCS.hh>
35 
36 namespace iRoCS
37 {
38 
39  void assignLayers(
40  atb::Array<double,3> const &data, std::vector<atb::Nucleus> &nuclei,
41  atb::IRoCS const &iRoCS, std::string const &modelFileName,
42  std::string const &cacheFileName = "",
43  bool updateMitoses = false, bool cacheCoordinates = false,
44  bool forceFeatureComputation = false, ProgressReporter *pr = NULL);
45 
46 }
47 
48 #endif
Array class derived from blitz++ Arrays for handling microscopic datasets with associated element siz...
The IRoCS class provides means to attach iRoCS to different kinds of processed root images...
Definition: iRoCS.hh:69
void assignLayers(atb::Array< double, 3 > const &data, std::vector< atb::Nucleus > &nuclei, atb::IRoCS const &iRoCS, std::string const &modelFileName, std::string const &cacheFileName="", bool updateMitoses=false, bool cacheCoordinates=false, bool forceFeatureComputation=false, ProgressReporter *pr=NULL)
Nucleus class containing cell nucelus specific parameters.
The intrinsic root coordinate system.